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RB38 protein (Chlamydomonas reinhardtii) - STRING interaction network
"RB38" - Chloroplast-targeted RNA-binding protein in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB38Chloroplast-targeted RNA-binding protein (382 aa)    
Predicted Functional Partners:
RB47
Polyadenylate-binding protein RB47; Binds the poly(A) tail of mRNA (636 aa)
           
  0.730
RB60
Protein disulfide isomerase 1 (532 aa)
           
  0.712
CPL11
Translation factor (278 aa)
           
  0.571
TBA1
psbA translation factor (431 aa)
           
  0.475
EDO97684
Predicted protein (285 aa)
     
        0.475
psbA
Photosystem II reaction center protein D1; This is one of the two reaction center proteins of photosystem II (352 aa)
           
  0.472
DAA00922
Photosystem II reaction center protein D1 (352 aa)
           
  0.472
EDP08434
poly(A) binding protein (136 aa)
     
   
  0.418
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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