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CDS1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"CDS1" - Mitochondrial half-size ABC transporter, membrane protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDS1Mitochondrial half-size ABC transporter, membrane protein (1062 aa)    
Predicted Functional Partners:
ATM3
Half-size ABC transporter, membrane protein (580 aa)
   
 
 
0.820
EDP09454
Predicted protein (997 aa)
     
        0.534
DPE1
4-alpha-glucanotransferase (941 aa)
     
        0.487
GLH1
Glycoside-hydrolase-like protein (903 aa)
     
        0.480
PFK1
Phosphofructokinase family protein (529 aa)
     
        0.478
EDP08899
Predicted protein (346 aa)
     
        0.475
ISA3
Isoamylase, starch debranching enzyme (725 aa)
     
        0.475
EDP06232
Predicted protein (226 aa)
     
        0.444
EDP06231
Predicted protein (1485 aa)
     
        0.440
EDP04257
PDR-like ABC transporter (1337 aa)
           
  0.440
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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