STRINGSTRING
LIG1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"LIG1" - DNA ligase in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIG1DNA ligase (813 aa)    
Predicted Functional Partners:
PCN1
PCNA proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
     
  0.993
MCM5
Minichromosome maintenance protein 5 (718 aa)
   
   
  0.979
MCM4
Minichromosome maintenance protein 4 (544 aa)
     
   
  0.972
RFC1
DNA replication factor C complex subunit 1 (1182 aa)
     
  0.971
FEN1
Nuclease, Rad2 family; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as [...] (396 aa)
   
  0.971
MCM3
Minichromosome maintenance protein 3 (608 aa)
     
   
  0.969
MCM2
Minichromosome maintenance protein 2 (887 aa)
     
   
  0.960
MCM7
Minichromosome maintenance protein 7 (724 aa)
     
   
  0.950
RFC4
DNA replication factor C complex subunit 4 (332 aa)
     
  0.949
RFC5
DNA replication factor C complex subunit 5 (356 aa)
     
  0.943
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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