STRINGSTRING
SPD1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"SPD1" - Spermidine synthase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPD1Spermidine synthase (318 aa)    
Predicted Functional Partners:
ODC2
Ornithine decarboxylase 2 (535 aa)
   
  0.985
DCA1
S-adenosylmethionine decarboxylase (390 aa)
     
 
  0.983
ODC1
Ornithine decarboxylase 1 (542 aa)
   
  0.976
CPA1
N-carbamoylputrescine amidase (297 aa)
   
 
  0.971
CPA2
N-carbamoylputrescine amidase (292 aa)
   
 
  0.957
EDP06237
Predicted protein (243 aa)
     
 
  0.902
AMX3
Copper amine oxidase, amiloride-sensitive (846 aa)
         
  0.901
SHKD1
Dehydroquinate dehydratase (554 aa)
     
 
  0.860
DPD1
Diaminopimelate decarboxylase (473 aa)
   
  0.850
AIH2
Agmatine iminohydrolase (421 aa)
         
  0.820
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
Server load: low (4%) [HD]