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SMP9 protein (Chlamydomonas reinhardtii) - STRING interaction network
"SMP9" - Small nuclear ribonucleoprotein Sm D1 in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMP9Small nuclear ribonucleoprotein Sm D1 (114 aa)    
Predicted Functional Partners:
SMPF
Small nuclear riboprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (85 aa)
     
  0.999
SMP3
Small nuclear ribonucleoprotein E (87 aa)
     
  0.999
SMP2
Small nuclear ribonucleoprotein polypeptide G (77 aa)
     
  0.999
SMP4
Small nuclear ribonucleoprotein Sm D2 (110 aa)
     
  0.998
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
0.998
SMP11
Sm protein (100 aa)
     
  0.991
PRP19
Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)
     
  0.990
LSM2
Sm-D1 protein (93 aa)
     
  0.990
LSM7
Small nuclear riboprotein, U6 sm-like protein (109 aa)
     
  0.987
EDP08691
Predicted protein (233 aa)
     
  0.987
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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