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VSR1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"VSR1" - Vacuolar sorting receptor in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSR1Vacuolar sorting receptor (700 aa)    
Predicted Functional Partners:
VTI1
Qb-SNARE protein, VTI1-family (223 aa)
     
 
  0.833
VPS35
Subunit of retromer complex (739 aa)
     
   
  0.824
VPS29
Subunit of retromer complex (188 aa)
           
  0.815
SYP5
Qc-SNARE protein, Syn8/Syntaxin8-family (243 aa)
           
  0.811
VAMP71
R-SNARE protein, VAMP72-family (218 aa)
           
  0.803
MAP2
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (510 aa)
           
  0.711
CGL60
Predicted protein (457 aa)
     
        0.649
VPS9
Guanine nucleotide exchange factor (495 aa)
     
   
  0.631
CHC1
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1738 aa)
       
 
  0.583
EDP01193
Predicted protein (551 aa)
     
        0.583
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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