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TRM3 protein (Chlamydomonas reinhardtii) - STRING interaction network
"TRM3" - tRNA in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRM3tRNA (guanosine)-2’-O-methyltransferase (113 aa)    
Predicted Functional Partners:
PYR5
Uridine 5’-monophosphate synthase (474 aa)
   
   
  0.760
EDP06649
Predicted protein (353 aa)
   
 
  0.745
EIF5Ba
Eukaryotic initiation factor (1651 aa)
   
   
  0.708
EDP06926
Predicted protein (796 aa)
   
   
  0.679
EDP07902
Predicted protein (1905 aa)
     
        0.673
EDO99483
Predicted protein (221 aa)
   
   
  0.615
TRM2B
tRNA (uracil-5)-methyltransferase (206 aa)
   
   
  0.596
FAP42
Flagellar associated protein, adenylate/guanylate kinase-like protein (2457 aa)
   
   
  0.590
RPA1
DNA-directed RNA polymerase I subunit A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1515 aa)
   
   
  0.586
TRM4
tRNA-(m5C) methyltransferase (392 aa)
   
   
  0.579
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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