STRINGSTRING
EDO97790 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDO97790" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDO97790Predicted protein (162 aa)    
Predicted Functional Partners:
EDP05135
SNF2 superfamily protein (1610 aa)
   
  0.873
EDP08691
Predicted protein (233 aa)
     
  0.793
NOT1
Component of CCR4-NOT transcriptional regulator complex (1440 aa)
     
  0.772
PRP19
Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)
       
  0.770
CAF1
CCR4-associated factor (300 aa)
       
  0.770
SMPF
Small nuclear riboprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (85 aa)
       
    0.767
PRP8
Splicing factor, component of the U5 snRNP and of the spliceosome (2346 aa)
     
  0.766
PRP17
Nuclear pre-mRNA splicing factor, component of the spliceosome (313 aa)
       
    0.764
EDP07967
Predicted protein (343 aa)
       
  0.757
XAB2
Transcription-coupled DNA repair protein (886 aa)
     
    0.757
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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