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HNR1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"HNR1" - Heterogeneous nuclear ribonucleoprotein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNR1Heterogeneous nuclear ribonucleoprotein (295 aa)    
Predicted Functional Partners:
EDP06444
Predicted protein (313 aa)
       
      0.927
PRP38
pre-mRNA splicing factor (284 aa)
     
 
  0.903
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
  0.898
SMP12
U1 small nuclear ribonucleoprotein (394 aa)
     
  0.858
EDO99837
RNA binding protein (316 aa)
     
  0.858
EDP00496
Predicted protein (178 aa)
     
  0.829
EDP01159
Predicted protein (170 aa)
     
  0.824
EDP00640
Predicted protein (169 aa)
     
  0.824
RBD2
Rubredoxin (117 aa)
           
  0.803
EDP07946
Predicted protein (434 aa)
     
  0.801
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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