STRINGSTRING
SEC8 protein (Chlamydomonas reinhardtii) - STRING interaction network
"SEC8" - Component of the exocyst complex in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC8Component of the exocyst complex (1203 aa)    
Predicted Functional Partners:
SEC6
Component of the exocyst complex (763 aa)
     
  0.994
SEC5
Component of the exocyst complex (1502 aa)
     
  0.987
EXO70
Component of the exocyst complex (803 aa)
     
  0.986
EDP03419
Predicted protein (886 aa)
     
  0.970
SLY1
SM/Sec1-family protein (640 aa)
     
  0.784
VPS45
SM/Sec1-family protein (620 aa)
     
  0.784
VPS33
SM/Sec1-family protein (740 aa)
     
  0.784
VPS11
Subunit of VPS-C complex (1102 aa)
     
   
  0.771
TRS85
Component of TRAPP complex, TRS85-like protein (1616 aa)
     
   
  0.751
VPS41
Vacuolar assembly protein (910 aa)
     
   
  0.749
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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