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NEP1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"NEP1" - pre-rRNA processing protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEP1pre-rRNA processing protein (230 aa)    
Predicted Functional Partners:
RNP3
Small nucleolar ribonucleoprotein U3 component (182 aa)
     
  0.994
NOP58
Nucleolar protein, component of C/D snoRNPs (508 aa)
     
  0.990
BLP1
Bystin-like protein (248 aa)
     
  0.989
EDP03058
Predicted protein (211 aa)
   
    0.988
EDP03163
Predicted protein (514 aa)
     
    0.987
EDP08133
Predicted protein (583 aa)
     
  0.987
EDP05291
Predicted protein (319 aa)
   
  0.987
NOP1
Nucleolar protein, component of C/D snoRNPs (315 aa)
     
  0.983
EDP07957
Predicted protein (1139 aa)
     
  0.983
EDP07082
Predicted protein (163 aa)
     
    0.980
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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