STRINGSTRING
EDO98415 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDO98415" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDO98415Predicted protein (387 aa)    
Predicted Functional Partners:
XRN1
Single-stranded RNA 5’->3’ exonuclease (171 aa)
     
 
  0.973
EDP01097
Predicted protein (181 aa)
       
      0.822
EDP01505
Predicted protein (299 aa)
     
 
  0.767
RNPH3
3’-5’ exoribonuclease PH component of the exosome (296 aa)
     
      0.636
RNPH1
3’-5’ exoribonuclease PH component of the exosome (245 aa)
     
 
  0.633
VPS36
Subunit of ESCRT-II complex (701 aa)
     
        0.530
EDO96956
Predicted protein (632 aa)
     
        0.520
GTR21
Glycosyl transferase, type ALG6, ALG8 (582 aa)
     
        0.513
VPS11
Subunit of VPS-C complex (1102 aa)
     
        0.497
EDP04348
Predicted protein (772 aa)
     
        0.482
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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