STRINGSTRING
VPS41 protein (Chlamydomonas reinhardtii) - STRING interaction network
"VPS41" - Vacuolar assembly protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS41Vacuolar assembly protein (910 aa)    
Predicted Functional Partners:
VPS18
Subunit of the VPS-C complex (1029 aa)
     
 
  0.996
VPS33
SM/Sec1-family protein (740 aa)
     
 
  0.990
VPS39
Subunit of VPS-C complex (812 aa)
     
 
  0.987
VPS11
Subunit of VPS-C complex (1102 aa)
     
 
  0.986
VCL1
VPS16-like protein (849 aa)
     
 
  0.971
VPS45
SM/Sec1-family protein (620 aa)
     
 
  0.949
SLY1
SM/Sec1-family protein (640 aa)
     
 
  0.911
SEC1
SM/Sec1-family protein (457 aa)
     
 
  0.878
VPS52
Subunit of GARP complex (657 aa)
     
   
  0.842
VPS53
Subunit of GARP complex (1033 aa)
     
   
  0.821
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
Server load: low (18%) [HD]