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PRP39 protein (Chlamydomonas reinhardtii) - STRING interaction network
"PRP39" - Nuclear pre-mRNA splicing factor and U1 snRNP component in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRP39Nuclear pre-mRNA splicing factor and U1 snRNP component (476 aa)    
Predicted Functional Partners:
EDP03322
Predicted protein (811 aa)
     
 
  0.979
PRP19
Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)
     
 
  0.960
SMP12
U1 small nuclear ribonucleoprotein (394 aa)
     
 
  0.953
EDO97595
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (1078 aa)
     
 
  0.949
PRP17
Nuclear pre-mRNA splicing factor, component of the spliceosome (313 aa)
     
 
  0.933
PRP6
Splicing factor, component of the U4/U6-U5 snRNP complex (947 aa)
     
 
  0.932
EDO96746
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (444 aa)
     
 
  0.921
EDP02708
Predicted protein (104 aa)
     
 
  0.920
EDO98006
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (1085 aa)
     
 
  0.916
EDP09595
Predicted protein (378 aa)
     
 
  0.912
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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