STRINGSTRING
PUS6 protein (Chlamydomonas reinhardtii) - STRING interaction network
"PUS6" - Pseudouridine synthase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUS6Pseudouridine synthase (303 aa)    
Predicted Functional Partners:
PUS8
Pseudouridine synthase (241 aa)
   
  0.567
EDP00143
Predicted protein (446 aa)
   
   
  0.548
EDO99099
Predicted protein (507 aa)
   
   
  0.544
EDP06649
Predicted protein (353 aa)
   
 
  0.537
EDP09041
Predicted protein (84 aa)
   
   
  0.493
PUS4
tRNA pseudouridine synthase (287 aa)
   
   
  0.491
EIF5Ba
Eukaryotic initiation factor (1651 aa)
   
   
  0.490
EDO98275
Predicted protein (185 aa)
   
   
  0.489
CBF5
Centromere/microtubule binding protein (435 aa)
   
   
  0.483
EDO98824
Predicted protein (207 aa)
   
   
  0.483
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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