STRINGSTRING
USE1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"USE1" - Qc-SNARE protein, USE1 family in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USE1Qc-SNARE protein, USE1 family (482 aa)    
Predicted Functional Partners:
EDP06607
Predicted protein (939 aa)
     
        0.665
EDO98197
Predicted protein (268 aa)
     
        0.659
EDP09636
Predicted protein (171 aa)
     
        0.651
EDP07674
Predicted protein (408 aa)
     
        0.650
EDO96472
Predicted protein (546 aa)
     
        0.649
EDP02246
Predicted protein (1150 aa)
     
        0.636
EDP07405
Predicted protein (667 aa)
     
        0.626
EDO98845
Predicted protein (471 aa)
     
        0.611
EDO97941
Predicted protein (660 aa)
     
        0.592
EDP06162
Predicted protein (401 aa)
     
        0.585
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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