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TRM5 protein (Chlamydomonas reinhardtii) - STRING interaction network
"TRM5" - tRNA-(N1G37) methyltransferase in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRM5tRNA-(N1G37) methyltransferase (400 aa)    
Predicted Functional Partners:
EDO99060
Predicted protein (334 aa)
 
 
   
  0.805
NCPR1
ADPH--cytochrome P450 reductase-related protein (480 aa)
     
   
  0.728
TRM4
tRNA-(m5C) methyltransferase (392 aa)
     
   
  0.724
EDP05523
Predicted protein (132 aa)
     
 
  0.695
EDP07168
Predicted protein (231 aa)
     
   
  0.678
TRM1
N2,N2-dimethylguanosine tRNA methyltransferase (410 aa)
     
   
  0.660
EDP04787
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (396 aa)
     
        0.654
TRM7
tRNA-2’-O-ribose methyltransferase; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (323 aa)
     
   
  0.644
EDP01550
Predicted protein (373 aa)
     
   
  0.638
EDO97885
Predicted protein (497 aa)
     
        0.617
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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