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PDE20 protein (Chlamydomonas reinhardtii) - STRING interaction network
"PDE20" - 3',5'-cyclic-nucleotide phosphodiesterase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDE203’,5’-cyclic-nucleotide phosphodiesterase (632 aa)    
Predicted Functional Partners:
CGK2
cGMP-dependent protein kinase (1027 aa)
     
  0.844
GSN1
Glutamate synthase, NADH-dependent (2201 aa)
     
   
  0.831
EDP05763
Predicted protein (206 aa)
     
  0.808
EDP03411
Predicted protein (252 aa)
     
  0.802
EDO98870
Predicted protein (299 aa)
     
  0.802
GSF1
Ferredoxin-dependent glutamate synthase (1552 aa)
     
   
  0.737
EDO98930
Predicted protein (257 aa)
     
        0.683
EDP03412
Predicted protein (203 aa)
     
 
  0.533
FAP50
Flagellar associated protein; Key component of the nexin-dynein regulatory complex (N- DRC), essential for N-DRC integrity. Involved in the regulation of flagellar motility (1159 aa)
     
 
  0.514
EDO96894
Predicted protein (61 aa)
     
   
  0.505
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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