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LCI19 protein (Chlamydomonas reinhardtii) - STRING interaction network
"LCI19" - Gamma hydroxybutyrate dehydrogenase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCI19Gamma hydroxybutyrate dehydrogenase (292 aa)    
Predicted Functional Partners:
PGP1
Phosphoglycolate phosphatase 1 (330 aa)
         
  0.913
AAT1
Alanine aminotransferase (521 aa)
     
 
  0.901
GYX1
Glycolate oxidase (382 aa)
       
    0.901
MAS1
Malate synthase (546 aa)
       
    0.900
PGP3
Phosphoglycolate phosphatase (347 aa)
         
    0.900
PGP2
Phosphoglycolate phosphatase (304 aa)
         
    0.900
AGT1
Alanine-glyoxylate transaminase (422 aa)
         
    0.900
SGA1a
Serine glyoxylate aminotransferase (448 aa)
         
    0.900
AGT2
Alanine-glyoxylate transaminase (488 aa)
       
    0.865
EDO96259
N-carbamyl-L-amino acid amidohydrolase (459 aa)
         
    0.816
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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