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CBK1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"CBK1" - Beta-carotene ketolase in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBK1Beta-carotene ketolase (444 aa)    
Predicted Functional Partners:
CHYB
Beta-carotene hydroxylase (297 aa)
           
  0.807
LCYE
Lycopene epsilon cyclase (583 aa)
     
   
  0.749
PSY
Phytoene synthase (382 aa)
         
  0.743
EDP03604
Flavoprotein monooxygenase (486 aa)
         
  0.712
PDS1
Phytoene desaturase (564 aa)
     
   
  0.688
EDO96367
Predicted protein (118 aa)
           
  0.495
SUMT1
S-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (367 aa)
           
  0.480
RPS11
Ribosomal protein S11 (156 aa)
           
  0.467
chlB
Light-independent protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex (687 aa)
           
  0.433
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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