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EDO99548 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDO99548" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDO99548Predicted protein (261 aa)    
Predicted Functional Partners:
UPF1
UPF1 protein (800 aa)
     
  0.932
EDP02282
Predicted protein (62 aa)
     
  0.930
EDP01462
Predicted protein (624 aa)
     
  0.930
EDP09959
RNA helicase (1203 aa)
     
  0.928
UPF2
UPF2 protein (301 aa)
     
 
  0.850
EDP05831
Predicted protein (156 aa)
     
  0.850
UPF3
UPF3 protein (371 aa)
     
  0.773
SMG1
Phosphatidylinositol 3-kinase-related protein kinase (4881 aa)
     
 
  0.770
EDP00439
Predicted protein (225 aa)
     
 
  0.762
EDP04508
Predicted protein (543 aa)
     
  0.745
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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