STRINGSTRING
SMP12 protein (Chlamydomonas reinhardtii) - STRING interaction network
"SMP12" - U1 small nuclear ribonucleoprotein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMP12U1 small nuclear ribonucleoprotein (394 aa)    
Predicted Functional Partners:
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
  0.995
SMP3
Small nuclear ribonucleoprotein E (87 aa)
     
  0.993
EDP01923
Predicted protein; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (154 aa)
     
  0.992
WWP1
WW domain protein (746 aa)
     
  0.991
EDP08691
Predicted protein (233 aa)
     
  0.991
SMP2
Small nuclear ribonucleoprotein polypeptide G (77 aa)
     
  0.986
SMP4
Small nuclear ribonucleoprotein Sm D2 (110 aa)
     
  0.983
SMP9
Small nuclear ribonucleoprotein Sm D1 (114 aa)
     
  0.983
SMPF
Small nuclear riboprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (85 aa)
     
  0.974
PRP8
Splicing factor, component of the U5 snRNP and of the spliceosome (2346 aa)
     
  0.973
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
Server load: low (10%) [HD]