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EDP00102 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP00102" - Histone deacetylase in Chlamydomonas reinhardtii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP00102Histone deacetylase (311 aa)    
Predicted Functional Partners:
EDP03175
Histone methyltransferase (1708 aa)
   
  0.904
SET4
Histone methyltransferase (2983 aa)
   
  0.904
EDO96788
SIN3 component of histone deacetylase complex (542 aa)
     
  0.861
EDP00599
Nucleosome remodeling factor (418 aa)
     
  0.824
EDP05135
SNF2 superfamily protein (1610 aa)
     
  0.775
HTV2
Histone H3 variant (97 aa)
   
  0.745
EDP04108
Predicted protein (2689 aa)
   
  0.729
EDP09315
High mobility group protein (552 aa)
     
  0.709
EDP08975
Histone H3 (135 aa)
     
  0.709
HFO2
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (103 aa)
     
  0.709
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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