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ODC1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"ODC1" - Ornithine decarboxylase 1 in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODC1Ornithine decarboxylase 1 (542 aa)    
Predicted Functional Partners:
SPD1
Spermidine synthase (318 aa)
   
  0.976
OTA1
Ornithine transaminase (446 aa)
   
 
  0.946
CPA2
N-carbamoylputrescine amidase (292 aa)
       
  0.906
CPA1
N-carbamoylputrescine amidase (297 aa)
       
  0.906
AMX3
Copper amine oxidase, amiloride-sensitive (846 aa)
     
 
  0.900
AHD1
Bifunctional aspartate kinase/homoserine dehydrogenase (917 aa)
   
 
  0.844
ODC2
Ornithine decarboxylase 2 (535 aa)
   
   
 
0.802
SPS1
Spermine synthase (375 aa)
   
  0.771
ASSD1
Aspartate semialdehyde dehydrogenase (370 aa)
   
 
  0.706
ASK1
Aspartate kinase (545 aa)
   
 
  0.699
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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