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UBC8 protein (Chlamydomonas reinhardtii) - STRING interaction network
"UBC8" - Ubiquitin-protein ligase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBC8Ubiquitin-protein ligase (1258 aa)    
Predicted Functional Partners:
EDP01689
Predicted protein (399 aa)
     
 
0.900
UBQ6
Ubiquitin fusion protein (805 aa)
     
  0.826
EDP09377
Predicted protein (336 aa)
     
    0.757
EDP01479
Predicted protein (1973 aa)
     
    0.746
TOR1
Target of rapamycin, growth-regulatory PI3K-like protein kinase (1696 aa)
     
  0.734
UBQ7
Ubiquitin-fusion protein (338 aa)
       
  0.719
UBQ4
Ubiquitin (242 aa)
       
  0.719
UBQ2
Bi-ubiquitin (153 aa)
       
  0.719
EDP00999
Predicted protein (370 aa)
       
  0.719
EDO97761
Predicted protein (381 aa)
       
  0.719
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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