STRINGSTRING
EDP00290 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP00290" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP00290Predicted protein (179 aa)    
Predicted Functional Partners:
EDP06127
Predicted protein (437 aa)
     
  0.852
EDP03477
Predicted protein (264 aa)
     
  0.852
EDP04478
RecA-like protein (238 aa)
     
 
  0.711
RECA
Chloroplast RecA recombination protein (415 aa)
       
 
  0.704
RAD51
DNA recombination protein (343 aa)
       
 
  0.704
EDP03468
Predicted protein (1192 aa)
     
  0.683
FEN1
Nuclease, Rad2 family; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as [...] (396 aa)
   
 
  0.677
EDP04921
Predicted protein (633 aa)
     
 
  0.647
EDO97376
DNA repair glycosylase (292 aa)
     
 
  0.558
EDO98655
Predicted protein (1513 aa)
     
 
  0.530
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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