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EDP00461 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP00461" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP00461Predicted protein (124 aa)    
Predicted Functional Partners:
SMP4
Small nuclear ribonucleoprotein Sm D2 (110 aa)
     
  0.971
SMP8
Sm protein (97 aa)
     
    0.970
SMP6A
U6 small ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (89 aa)
       
  0.970
SMP3
Small nuclear ribonucleoprotein E (87 aa)
     
  0.954
SMP2
Small nuclear ribonucleoprotein polypeptide G (77 aa)
     
  0.943
PRP8
Splicing factor, component of the U5 snRNP and of the spliceosome (2346 aa)
     
  0.934
ABH1
mRNA cap-binding protein (1134 aa)
     
    0.933
EDO98295
Predicted protein (142 aa)
     
    0.927
PRP6
Splicing factor, component of the U4/U6-U5 snRNP complex (947 aa)
     
  0.888
CGLD3
Predicted protein (556 aa)
     
    0.863
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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