STRINGSTRING
SMC6A protein (Chlamydomonas reinhardtii) - STRING interaction network
"SMC6A" - Structural maintenance of chromosomes protein 6A in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC6AStructural maintenance of chromosomes protein 6A (1207 aa)    
Predicted Functional Partners:
SMC5B
Structural maintenance of chromosomes protein 5B (1124 aa)
     
0.994
SMC5A
Structural maintenance of chromosomes protein 5A (940 aa)
     
0.980
TOP2
DNA topoisomerase II; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1167 aa)
     
 
  0.973
EDO99342
Predicted protein (156 aa)
     
  0.968
SMC3
Structural maintenance of chromosomes protein 3 (1121 aa)
     
 
  0.963
EDP08900
Condensin complex subunit H protein (557 aa)
     
  0.956
EDP00909
Cohesin subunit SCC1b (304 aa)
     
  0.926
EDO96765
Predicted protein (242 aa)
     
  0.922
EDP00964
Predicted protein (1253 aa)
     
  0.920
EDP00838
Cohesin subunit SCC1a (556 aa)
     
  0.917
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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