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EDP00653 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP00653" - F-box protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP00653F-box protein (187 aa)    
Predicted Functional Partners:
CUL3
Cullin (744 aa)
           
  0.731
CUL1
Ubiquitin ligase SCF complex subunit cullin (725 aa)
     
   
  0.723
PDXK1
Pyridoxal kinase (481 aa)
           
  0.712
CUL2
Cullin (782 aa)
     
   
  0.613
UBC9
Ubiquitin conjugating enzyme (148 aa)
           
  0.539
RPL9
Ribosomal protein L9 (191 aa)
           
  0.518
UBQ4
Ubiquitin (242 aa)
     
   
  0.497
SKP1
E3 ubiquitin ligase (157 aa)
           
  0.497
RPL40
Ribosomal protein L40 (128 aa)
           
  0.479
HTV1
Histone H3 variant (105 aa)
           
  0.474
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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