STRINGSTRING
SMC6B protein (Chlamydomonas reinhardtii) - STRING interaction network
"SMC6B" - Structural maintenance of chromosomes protein 6B in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC6BStructural maintenance of chromosomes protein 6B (1106 aa)    
Predicted Functional Partners:
SMC5A
Structural maintenance of chromosomes protein 5A (940 aa)
     
  0.993
SMC5B
Structural maintenance of chromosomes protein 5B (1124 aa)
     
  0.987
EDO99342
Predicted protein (156 aa)
     
  0.968
SMC3
Structural maintenance of chromosomes protein 3 (1121 aa)
     
 
  0.957
TOP2
DNA topoisomerase II; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1167 aa)
     
 
  0.947
EDP00838
Cohesin subunit SCC1a (556 aa)
     
  0.922
EDP00909
Cohesin subunit SCC1b (304 aa)
     
  0.917
EDP06267
Chromosome condensation complex protein (2665 aa)
     
  0.908
EDO96765
Predicted protein (242 aa)
       
  0.891
EDO99556
Predicted protein (1601 aa)
     
  0.886
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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