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ABH1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"ABH1" - mRNA cap-binding protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABH1mRNA cap-binding protein (1134 aa)    
Predicted Functional Partners:
EDP05831
Predicted protein (156 aa)
     
  0.998
REF1
RNA export factor (137 aa)
     
  0.982
SPL2
Splicing factor 3a, subunit 2 (287 aa)
       
  0.972
EDP09509
Predicted protein (494 aa)
     
    0.956
EDO96746
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (444 aa)
     
    0.954
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
  0.949
EDP04765
Predicted protein (266 aa)
       
  0.945
EIF4G
Eukaryotic initiation factor (797 aa)
       
  0.945
EDP01923
Predicted protein; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (154 aa)
     
  0.944
SMP12
U1 small nuclear ribonucleoprotein (394 aa)
     
  0.944
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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