STRINGSTRING
TRN1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"TRN1" - Transportin in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRN1Transportin (898 aa)    
Predicted Functional Partners:
RAN1
Ran-like small GTPase; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (223 aa)
       
 
  0.952
EDO98390
Polyadenylate binding protein (464 aa)
     
 
  0.931
EDP07744
Predicted protein (116 aa)
     
 
  0.920
IPB2
Importin beta (917 aa)
     
 
  0.855
EDO99135
Predicted protein (1077 aa)
     
 
  0.851
EDO99837
RNA binding protein (316 aa)
     
 
  0.820
EDO98460
EMB30/GNOM-like protein (1490 aa)
     
      0.763
EDP02688
Predicted protein (269 aa)
     
 
  0.720
FBT2
Folate transporter (409 aa)
           
  0.712
FBT3
Folate transporter (476 aa)
           
  0.712
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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