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EDP00838 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP00838" - Cohesin subunit SCC1a in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP00838Cohesin subunit SCC1a (556 aa)    
Predicted Functional Partners:
SMC1
Structural maintenance of chromosomes protein 1 (818 aa)
     
  0.989
SCC3
Cohesin complex subunit (1259 aa)
     
  0.989
SMC3
Structural maintenance of chromosomes protein 3 (1121 aa)
     
  0.989
EDO99556
Predicted protein (1601 aa)
     
  0.962
SMC5A
Structural maintenance of chromosomes protein 5A (940 aa)
     
  0.955
SMC4
Structural maintenance of chromosomes protein 4 (1237 aa)
     
  0.946
SMC5B
Structural maintenance of chromosomes protein 5B (1124 aa)
     
  0.939
SMC6B
Structural maintenance of chromosomes protein 6B (1106 aa)
     
  0.922
SMC6A
Structural maintenance of chromosomes protein 6A (1207 aa)
     
  0.917
SMC2
Structural maintenance of chromosomes protein 2 (1165 aa)
     
  0.902
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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