STRINGSTRING
VPS52 protein (Chlamydomonas reinhardtii) - STRING interaction network
"VPS52" - Subunit of GARP complex in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS52Subunit of GARP complex (657 aa)    
Predicted Functional Partners:
VPS53
Subunit of GARP complex (1033 aa)
     
  0.996
EDP01844
Predicted protein (890 aa)
     
  0.989
RABH1
Small rab-related GTPase (211 aa)
     
  0.972
SYP6
Qc-SNARE protein, Tlg1/Syntaxin 6-family (225 aa)
     
  0.955
SYP5
Qc-SNARE protein, Syn8/Syntaxin8-family (243 aa)
       
  0.953
COG8
Component of oligomeric golgi complex 8 (546 aa)
     
  0.935
COG3
Component of oligomeric golgi complex 3 (805 aa)
     
  0.914
COG6
Component of oligomeric golgi complex 6 (681 aa)
     
  0.905
COG4
Component of oligomeric golgi complex 4 (1094 aa)
     
 
  0.898
EDP05767
Predicted protein (912 aa)
     
 
  0.896
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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