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PEPC1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"PEPC1" - Phosphoenolpyruvate carboxylase, isoform 1 in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPC1Phosphoenolpyruvate carboxylase, isoform 1 (471 aa)    
Predicted Functional Partners:
MDH2
Malate dehydrogenase (353 aa)
         
  0.968
MDH4
Malate dehydrogenase (373 aa)
         
  0.968
MDH3
NAD-dependent malate dehydrogenase (302 aa)
         
  0.968
MDH1
Malate dehydrogenase (355 aa)
         
  0.968
PYK2
Pyruvate kinase (617 aa)
     
 
  0.961
PPD1
Pyruvate phosphate dikinase (888 aa)
         
  0.959
PPD2
Pyruvate phosphate dikinase (952 aa)
         
  0.959
MDH5
NADP-Malate dehydrogenase (415 aa)
     
 
  0.959
PYC1
Pyruvate carboxylase (1165 aa)
   
 
  0.954
GSN1
Glutamate synthase, NADH-dependent (2201 aa)
     
 
  0.950
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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