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CCD1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"CCD1" - Carotenoid cleavage dioxygenase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCD1Carotenoid cleavage dioxygenase (613 aa)    
Predicted Functional Partners:
SOUL2
SOUL heme-binding protein (235 aa)
   
     
  0.838
EDP06595
Predicted protein (564 aa)
   
     
  0.709
EDP01276
Predicted protein (558 aa)
   
   
  0.584
EDP01685
Isomerase (300 aa)
     
   
  0.542
EDO99581
Predicted protein (538 aa)
   
          0.515
EDP00013
Predicted protein (566 aa)
   
   
  0.508
EDO97414
Short chain dehydrogenase/reductase (277 aa)
           
  0.496
EDO97055
Short-chain dehydrogenase/reductase (426 aa)
           
  0.496
CSP41b
Chloroplast stem-loop-binding protein (401 aa)
     
   
  0.494
LCYE
Lycopene epsilon cyclase (583 aa)
           
  0.492
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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