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LSM5 protein (Chlamydomonas reinhardtii) - STRING interaction network
"LSM5" - Sm-E protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM5Sm-E protein (95 aa)    
Predicted Functional Partners:
SMP8
Sm protein (97 aa)
     
  0.999
LSM7
Small nuclear riboprotein, U6 sm-like protein (109 aa)
   
  0.999
SMP11
Sm protein (100 aa)
     
  0.998
LSM2
Sm-D1 protein (93 aa)
     
  0.998
SMP6A
U6 small ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (89 aa)
     
  0.998
SMP6B
U6 snRNA-associated Sm-like protein LSm4 (134 aa)
     
  0.997
SMPF
Small nuclear riboprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (85 aa)
     
  0.996
SMP2
Small nuclear ribonucleoprotein polypeptide G (77 aa)
     
  0.995
LSM1
Sm protein LSm1 (126 aa)
     
  0.993
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
  0.985
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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