STRINGSTRING
VPS5A protein (Chlamydomonas reinhardtii) - STRING interaction network
"VPS5A" - Subunit of retromer complex in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS5ASubunit of retromer complex (410 aa)    
Predicted Functional Partners:
VPS29
Subunit of retromer complex (188 aa)
     
  0.973
VPS26
Subunit of retromer complex (320 aa)
     
  0.972
VPS35
Subunit of retromer complex (739 aa)
     
  0.970
VPS5B
Subunit of retromer complex (550 aa)
     
 
 
0.809
RABF1
Small rab-related GTPase (202 aa)
     
  0.749
EDP00130
CLIP-associating-protein (1581 aa)
       
 
  0.715
EDP05338
Protein of receptor mediated endocytosis family (1482 aa)
       
 
  0.671
PIN4
Peptidyl-prolyl cis-trans isomerase, parvulin-type (255 aa)
       
      0.664
EFG3
Elongation factor-like protein (428 aa)
       
      0.622
VPS34
VPS34-like PI-3-kinase (1098 aa)
     
  0.565
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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