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CBP20 protein (Chlamydomonas reinhardtii) - STRING interaction network
"CBP20" - Nuclear cap-binding protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBP20Nuclear cap-binding protein (143 aa)    
Predicted Functional Partners:
SMP3
Small nuclear ribonucleoprotein E (87 aa)
       
  0.923
EDP00988
AIR synthase-related protein (1403 aa)
   
      0.920
SMP12
U1 small nuclear ribonucleoprotein (394 aa)
     
   
  0.891
SMP1
Small nuclear ribonucleoprotein (127 aa)
       
  0.879
SPL3
SF3A3 splicing factor 3a, subunit 3 (508 aa)
     
  0.876
EDP01981
Predicted protein (110 aa)
     
  0.851
SPL8
U2 snRNP auxiliary factor, large subunit (306 aa)
   
  0.847
EDP08691
Predicted protein (233 aa)
     
  0.846
EDP08357
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (396 aa)
     
0.836
SMP6A
U6 small ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (89 aa)
     
  0.832
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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