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XRN1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"XRN1" - Single-stranded RNA 5'->3' exonuclease in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XRN1Single-stranded RNA 5’->3’ exonuclease (171 aa)    
Predicted Functional Partners:
DCP2
Decapping enzyme complex catalytic component (233 aa)
     
  0.991
EDP03984
Predicted protein (119 aa)
     
  0.982
EDO98415
Predicted protein (387 aa)
     
 
  0.973
LSM1
Sm protein LSm1 (126 aa)
       
  0.960
MTR4
DEAD-box family ATP dependent helicase (945 aa)
     
 
  0.952
RRP40
3’-5’ exonuclease component of the exosome (231 aa)
     
 
  0.913
EIF4E
Eukaryotic initiation factor (202 aa)
     
 
  0.872
LSM7
Small nuclear riboprotein, U6 sm-like protein (109 aa)
       
  0.860
SMP6B
U6 snRNA-associated Sm-like protein LSm4 (134 aa)
       
  0.858
SMP6A
U6 small ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (89 aa)
       
  0.851
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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