STRINGSTRING
EDP01689 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP01689" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP01689Predicted protein (399 aa)    
Predicted Functional Partners:
EDP05950
Predicted protein (452 aa)
     
  0.934
EDP09147
Predicted protein (545 aa)
     
  0.925
RPN11
26S proteasome regulatory subunit (303 aa)
       
  0.923
EDO97289
Predicted protein (292 aa)
       
  0.923
UBC8
Ubiquitin-protein ligase (1258 aa)
     
 
0.900
PBD1
20S proteasome beta subunit D, type 2; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (193 aa)
       
  0.883
UBQ6
Ubiquitin fusion protein (805 aa)
     
  0.841
EDP03665
Predicted protein (400 aa)
       
  0.834
UBQ7
Ubiquitin-fusion protein (338 aa)
       
  0.812
UBQ4
Ubiquitin (242 aa)
       
  0.812
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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