STRINGSTRING
EDP01923 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP01923" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP01923Predicted protein; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (154 aa)    
Predicted Functional Partners:
SMP3
Small nuclear ribonucleoprotein E (87 aa)
     
  0.992
SMP12
U1 small nuclear ribonucleoprotein (394 aa)
     
  0.992
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
  0.988
SMP2
Small nuclear ribonucleoprotein polypeptide G (77 aa)
     
  0.988
SMP9
Small nuclear ribonucleoprotein Sm D1 (114 aa)
     
  0.984
SMP4
Small nuclear ribonucleoprotein Sm D2 (110 aa)
     
  0.983
SMPF
Small nuclear riboprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (85 aa)
     
  0.971
EDP05831
Predicted protein (156 aa)
     
  0.956
LSM2
Sm-D1 protein (93 aa)
     
  0.946
ABH1
mRNA cap-binding protein (1134 aa)
     
  0.944
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
Server load: low (10%) [HD]