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DBR1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"DBR1" - RNA lariat debranching enzyme in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DBR1RNA lariat debranching enzyme (350 aa)    
Predicted Functional Partners:
EDO98367
Predicted protein (176 aa)
     
 
  0.804
SMP12
U1 small nuclear ribonucleoprotein (394 aa)
     
   
  0.785
EDO96002
Predicted protein (73 aa)
 
 
     
0.725
DBP2
DEAD-box RNA helicase (513 aa)
           
  0.705
EDP03531
DEAD box RNA helicase (407 aa)
           
  0.705
EDP01779
Predicted protein (1143 aa)
     
 
  0.632
SPLH2
DEAH-box nuclear pre-mRNA splicing factor (371 aa)
       
 
  0.552
EDO99256
Predicted protein (240 aa)
     
 
  0.522
EDP03231
Predicted protein (1072 aa)
     
        0.516
EDP02467
Predicted protein (434 aa)
     
        0.514
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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