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VIG1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"VIG1" - Vasa intronic gene in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VIG1Vasa intronic gene (361 aa)    
Predicted Functional Partners:
GLD1
Glucose-6-phosphate-1-dehydrogenase (286 aa)
           
  0.803
DCL2
Dicer-like protein (5684 aa)
           
  0.714
RDP1
Rhodanese domain phosphatase (116 aa)
           
  0.711
MUT6
DEAH-box RNA helicase (1278 aa)
           
  0.710
EDP03531
DEAD box RNA helicase (407 aa)
     
   
  0.695
DBP2
DEAD-box RNA helicase (513 aa)
     
   
  0.694
EDP07462
Predicted protein (940 aa)
     
      0.592
EDO98458
Histone methyltransferase (711 aa)
     
   
  0.569
EDP09064
Histone methyltransferase (484 aa)
     
   
  0.484
DCL3
Dicer-like protein (3556 aa)
           
  0.480
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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