STRINGSTRING
PRKDC protein (Chlamydomonas reinhardtii) - STRING interaction network
"PRKDC" - DNA dependent protein kinase catalytic subunit in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRKDCDNA dependent protein kinase catalytic subunit (1431 aa)    
Predicted Functional Partners:
EDP04144
Predicted protein (1362 aa)
     
        0.651
LSP1
Signal transducer for phototaxis (716 aa)
     
        0.622
ATM1
DNA damage signaling kinase, ATM/TEL1-related (950 aa)
     
        0.589
EDP04715
Predicted protein (1209 aa)
     
        0.580
EDP09933
Predicted protein (2852 aa)
     
        0.552
EDO97964
Predicted protein (496 aa)
     
        0.545
EDP02383
Predicted protein (322 aa)
     
        0.526
EDP03259
Predicted protein (469 aa)
     
        0.525
EDP05066
Predicted protein (1712 aa)
     
        0.517
POLZ1
DNA polymerase zeta (729 aa)
     
        0.516
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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