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SMP3 protein (Chlamydomonas reinhardtii) - STRING interaction network
"SMP3" - Small nuclear ribonucleoprotein E in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMP3Small nuclear ribonucleoprotein E (87 aa)    
Predicted Functional Partners:
SMPF
Small nuclear riboprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (85 aa)
     
  0.999
SMP2
Small nuclear ribonucleoprotein polypeptide G (77 aa)
     
  0.999
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
  0.999
SMP9
Small nuclear ribonucleoprotein Sm D1 (114 aa)
     
  0.999
SMP4
Small nuclear ribonucleoprotein Sm D2 (110 aa)
     
  0.999
SMP6B
U6 snRNA-associated Sm-like protein LSm4 (134 aa)
     
  0.997
SMP6A
U6 small ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (89 aa)
     
  0.995
SMP8
Sm protein (97 aa)
     
  0.994
PRP19
Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)
     
  0.994
SMP12
U1 small nuclear ribonucleoprotein (394 aa)
     
  0.993
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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