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EDP02708 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP02708" - Predicted protein in Chlamydomonas reinhardtii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP02708Predicted protein (104 aa)    
Predicted Functional Partners:
WWP1
WW domain protein (746 aa)
     
 
  0.973
SMP12
U1 small nuclear ribonucleoprotein (394 aa)
     
 
  0.969
EDP00885
Predicted protein (75 aa)
     
 
  0.949
EDP09595
Predicted protein (378 aa)
     
 
  0.922
PRP39
Nuclear pre-mRNA splicing factor and U1 snRNP component (476 aa)
     
 
  0.920
ABH1
mRNA cap-binding protein (1134 aa)
     
 
  0.903
EDP01923
Predicted protein; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (154 aa)
       
 
  0.898
SMP1
Small nuclear ribonucleoprotein (127 aa)
       
 
  0.882
PRP6
Splicing factor, component of the U4/U6-U5 snRNP complex (947 aa)
     
 
  0.859
EDO97595
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (1078 aa)
     
 
  0.849
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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