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SHKD1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"SHKD1" - Dehydroquinate dehydratase in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHKD1Dehydroquinate dehydratase (554 aa)    
Predicted Functional Partners:
SHKF1
Shikimate kinase (327 aa)
   
  0.998
DHQS
3-dehydroquinate synthase (476 aa)
 
  0.997
SHKH1
Chorismate synthase (422 aa)
   
  0.991
SHKG1
5-enolpyruvylshikimate-3-phosphate synthase (512 aa)
 
 
  0.957
ATF1
Glucosamine--fructose-6-phosphate aminotransferase (679 aa)
     
 
  0.953
METM
S-Adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (By similarity) (390 aa)
   
 
  0.944
CHM1
Chorismate mutase (347 aa)
   
  0.925
PFK1
Phosphofructokinase family protein (529 aa)
     
      0.924
PFK2
Phosphofructokinase family protein (512 aa)
     
      0.924
PFK3
Phosphofructokinase (1005 aa)
     
      0.924
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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