STRINGSTRING
UBC7 protein (Chlamydomonas reinhardtii) - STRING interaction network
"UBC7" - Ubiquitin-protein ligase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBC7Ubiquitin-protein ligase (848 aa)    
Predicted Functional Partners:
EDP09116
Predicted protein (408 aa)
     
        0.649
EDP06431
Predicted protein (1012 aa)
     
        0.597
EDP06288
Predicted protein (551 aa)
     
        0.533
EDP06357
Predicted protein (1310 aa)
     
        0.514
EDP00655
Predicted protein (1154 aa)
     
        0.511
EDP05153
Predicted protein (1199 aa)
     
        0.507
EDO98862
Predicted protein (941 aa)
     
        0.504
EDO98360
Predicted protein (1438 aa)
     
        0.503
EDP06024
Predicted protein (308 aa)
     
        0.502
EDP04774
Predicted protein (363 aa)
     
        0.502
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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