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LSM1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"LSM1" - Sm protein LSm1 in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM1Sm protein LSm1 (126 aa)    
Predicted Functional Partners:
LSM2
Sm-D1 protein (93 aa)
     
  0.997
LSM5
Sm-E protein (95 aa)
     
  0.993
LSM7
Small nuclear riboprotein, U6 sm-like protein (109 aa)
     
  0.992
SMP6A
U6 small ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (89 aa)
     
  0.991
SMP8
Sm protein (97 aa)
     
  0.990
SMP6B
U6 snRNA-associated Sm-like protein LSm4 (134 aa)
     
  0.990
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
  0.977
SMP4
Small nuclear ribonucleoprotein Sm D2 (110 aa)
     
  0.974
DCP2
Decapping enzyme complex catalytic component (233 aa)
       
  0.970
XRN1
Single-stranded RNA 5’->3’ exonuclease (171 aa)
       
  0.960
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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